Index

_

__call__() (materials_commons.cli.list_objects.ListObjects method)

__eq__() (materials_commons.cli.user_config.RemoteConfig method)

A

add_custom_options() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method) (materials_commons.cli.subcommands.proj.ProjSubcommand method)

add_owner() (in module materials_commons.cli.tmp_functions) add_remote_option() (in module materials_commons.cli.functions) as_is() (in module materials_commons.cli.functions)

C

change_dataset_file_selection() (in module materials_commons.cli.subcommands.ls) check_file_selection() (in module materials_commons.cli.file_functions) check_transfer_types() (in module materials_commons.cli.globus) checksum() (in module materials_commons.cli.functions) clipaths_to_local_abspaths() (in module materials_commons.cli.tree_functions) clipaths_to_mcpaths() (in module materials_commons.cli.tree_functions) clone_as() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) clone_project() (in module materials_commons.cli.functions) clone_subcommand() (in module materials_commons.cli.subcommands.clone) ClonedProject (class in materials_commons.cli.cloned_project)

close() (materials_commons.cli.sqltable.SqlTable method) Config (class in materials_commons.cli.user_config) config_dir (materials_commons.cli.functions.ProjectConfig attribute) config_path (materials_commons.cli.functions.ProjectConfig attribute) config_subcommand() (in module materials_commons.cli.subcommands.config) connect() (materials_commons.cli.sqltable.SqlTable method) create() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method) create_all_directories_on_path() (materials_commons.cli.globus.GlobusOperations method)

D

DatasetSubcommand (class in materials_commons.cli.subcommands.dataset) dbpath() (in module materials_commons.cli.sqltable) default_print_fmt() (materials_commons.cli.functions.ProjectTable static method) (materials_commons.cli.treedb.LocalTree static method) (materials_commons.cli.treedb.RemoteTree static method) default_remote (materials_commons.cli.user_config.Config attribute) delete() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method) (materials_commons.cli.subcommands.proj.ProjSubcommand method) delete_by_path() (materials_commons.cli.treedb.TreeTable method)

desc (materials_commons.cli.subcommands.dataset.DatasetSubcommand attribute) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand attribute) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand attribute) diff_versions() (in module materials_commons.cli.subcommands.versions) do_with_queue() (in module materials_commons.cli.treedb) down() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) down_subcommand() (in module materials_commons.cli.subcommands.down) download() (materials_commons.cli.cloned_project.ClonedProject method) download_file_as_string() (in module materials_commons.cli.file_functions) (in module materials_commons.cli.subcommands.down) download_v0() (materials_commons.cli.globus.GlobusOperations method) download_version() (in module materials_commons.cli.subcommands.versions)

E

epoch_time() (in module materials_commons.cli.functions) experiment_id (materials_commons.cli.functions.ProjectConfig attribute)

experiment_uuid (materials_commons.cli.functions.ProjectConfig attribute) ExptSubcommand (class in materials_commons.cli.subcommands.expt)

F

finish() (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method)

format_time() (in module materials_commons.cli.functions)

G

get_all_from_experiment() (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.proj.ProjSubcommand method) get_all_from_project() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method) (materials_commons.cli.subcommands.proj.ProjSubcommand method) get_all_from_remote() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method) (materials_commons.cli.subcommands.proj.ProjSubcommand method) get_all_objects() (materials_commons.cli.list_objects.ListObjects method) get_by_path_if_exists() (in module materials_commons.cli.file_functions) get_dataset() (in module materials_commons.cli.tmp_functions) get_local_endpoint_id() (in module materials_commons.cli.globus) get_local_endpoint_id_or_exit() (in module materials_commons.cli.globus) get_params() (materials_commons.cli.user_config.RemoteConfig method) get_parent_id() (in module materials_commons.cli.file_functions)

get_remote() (materials_commons.cli.list_objects.ListObjects method) get_remote_config_and_login_if_necessary() (in module materials_commons.cli.user_config) get_transfer_rt_or_login() (in module materials_commons.cli.globus) get_types() (in module materials_commons.cli.tree_functions) getit() (in module materials_commons.cli.functions) glob() (materials_commons.cli.cloned_project.ClonedProject method) globus (materials_commons.cli.user_config.Config attribute) globus_download_id (materials_commons.cli.functions.ProjectConfig attribute) globus_subcommand() (in module materials_commons.cli.subcommands.globus) globus_upload_id (materials_commons.cli.functions.ProjectConfig attribute) GlobusConfig (class in materials_commons.cli.user_config) GlobusDownloadTaskSubcommand (class in materials_commons.cli.subcommands.globus) GlobusOperations (class in materials_commons.cli.globus) GlobusUploadTaskSubcommand (class in materials_commons.cli.subcommands.globus) goto() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method) (materials_commons.cli.subcommands.proj.ProjSubcommand method) goto_globus() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method)

H

humanize() (in module materials_commons.cli.functions)

I

init_project() (in module materials_commons.cli.subcommands.init) init_subcommand() (in module materials_commons.cli.subcommands.init) insert_non_existent() (materials_commons.cli.treedb.LocalTree method) (materials_commons.cli.treedb.RemoteTree method) insert_or_replace() (materials_commons.cli.sqltable.SqlTable method)

InterfaceConfig (class in materials_commons.cli.user_config) interfaces (materials_commons.cli.user_config.Config attribute) is_child_data_mismatch() (in module materials_commons.cli.tree_functions) is_type_mismatch() (in module materials_commons.cli.tree_functions) isdir() (in module materials_commons.cli.file_functions) isfile() (in module materials_commons.cli.file_functions)

L

list_data() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method) (materials_commons.cli.subcommands.proj.ProjSubcommand method)

list_versions() (in module materials_commons.cli.subcommands.versions) ListObjects (class in materials_commons.cli.list_objects) local_path (materials_commons.cli.cloned_project.ClonedProject attribute) LocalTree (class in materials_commons.cli.treedb) ls_subcommand() (in module materials_commons.cli.subcommands.ls)

M

main() (in module materials_commons.cli.parser) make_client() (materials_commons.cli.user_config.RemoteConfig method) make_client_and_login_if_necessary() (in module materials_commons.cli.user_config) make_file() (in module materials_commons.cli.functions) make_globus_download_parser() (in module materials_commons.cli.subcommands.globus) make_globus_parser() (in module materials_commons.cli.subcommands.globus) make_globus_upload_parser() (in module materials_commons.cli.subcommands.globus) make_local_abspath() (in module materials_commons.cli.file_functions) make_local_abspaths_for_upload() (in module materials_commons.cli.tree_functions) make_local_expt() (in module materials_commons.cli.functions) make_local_project() (in module materials_commons.cli.functions) make_local_project_client() (in module materials_commons.cli.functions) make_mcpath() (in module materials_commons.cli.file_functions) make_mcpaths_for_upload() (in module materials_commons.cli.tree_functions) make_parser() (in module materials_commons.cli.parser) (in module materials_commons.cli.subcommands.clone) (in module materials_commons.cli.subcommands.config) (in module materials_commons.cli.subcommands.dataset) (in module materials_commons.cli.subcommands.down) (in module materials_commons.cli.subcommands.expt) (in module materials_commons.cli.subcommands.init) (in module materials_commons.cli.subcommands.ls) (in module materials_commons.cli.subcommands.mkdir) (in module materials_commons.cli.subcommands.mv) (in module materials_commons.cli.subcommands.proj) (in module materials_commons.cli.subcommands.remote) (in module materials_commons.cli.subcommands.rm) (in module materials_commons.cli.subcommands.up) (in module materials_commons.cli.subcommands.versions) (materials_commons.cli.list_objects.ListObjects method) make_transfer_client() (in module materials_commons.cli.globus) make_version_record() (in module materials_commons.cli.subcommands.versions) make_versions() (in module materials_commons.cli.subcommands.versions) materials_commons.cli module materials_commons.cli.cloned_project module materials_commons.cli.exceptions module materials_commons.cli.file_functions module materials_commons.cli.functions module materials_commons.cli.globus module materials_commons.cli.list_objects module materials_commons.cli.parser module materials_commons.cli.print_formatter module materials_commons.cli.sqltable module materials_commons.cli.subcommands module materials_commons.cli.subcommands.clone module materials_commons.cli.subcommands.config module materials_commons.cli.subcommands.dataset module materials_commons.cli.subcommands.down module materials_commons.cli.subcommands.expt module materials_commons.cli.subcommands.globus module

materials_commons.cli.subcommands.init module materials_commons.cli.subcommands.ls module materials_commons.cli.subcommands.mkdir module materials_commons.cli.subcommands.mv module materials_commons.cli.subcommands.proj module materials_commons.cli.subcommands.remote module materials_commons.cli.subcommands.rm module materials_commons.cli.subcommands.up module materials_commons.cli.subcommands.versions module materials_commons.cli.tmp_functions module materials_commons.cli.tree_functions module materials_commons.cli.treedb module materials_commons.cli.user_config module MCCLIException MissingRemoteException mkdir() (in module materials_commons.cli.tree_functions) mkdir_if() (in module materials_commons.cli.functions) mkdir_subcommand() (in module materials_commons.cli.subcommands.mkdir) module materials_commons.cli materials_commons.cli.cloned_project materials_commons.cli.exceptions materials_commons.cli.file_functions materials_commons.cli.functions materials_commons.cli.globus materials_commons.cli.list_objects materials_commons.cli.parser materials_commons.cli.print_formatter materials_commons.cli.sqltable materials_commons.cli.subcommands materials_commons.cli.subcommands.clone materials_commons.cli.subcommands.config materials_commons.cli.subcommands.dataset materials_commons.cli.subcommands.down materials_commons.cli.subcommands.expt materials_commons.cli.subcommands.globus materials_commons.cli.subcommands.init materials_commons.cli.subcommands.ls materials_commons.cli.subcommands.mkdir materials_commons.cli.subcommands.mv materials_commons.cli.subcommands.proj materials_commons.cli.subcommands.remote materials_commons.cli.subcommands.rm materials_commons.cli.subcommands.up materials_commons.cli.subcommands.versions materials_commons.cli.tmp_functions materials_commons.cli.tree_functions materials_commons.cli.treedb materials_commons.cli.user_config move() (in module materials_commons.cli.tree_functions) MultipleRemoteException mv_subcommand() (in module materials_commons.cli.subcommands.mv)

N

needs_update() (materials_commons.cli.treedb.LocalTree method) (materials_commons.cli.treedb.RemoteTree method)

NoDefaultRemoteException

O

optional_remote() (in module materials_commons.cli.functions) optional_remote_config() (in module materials_commons.cli.functions)

output() (materials_commons.cli.list_objects.ListObjects method) output_method() (in module materials_commons.cli.list_objects)

P

parse_args() (materials_commons.cli.list_objects.ListObjects method) path_in_project() (in module materials_commons.cli.file_functions) print() (materials_commons.cli.print_formatter.PrintFormatter method) print_dataset_details() (in module materials_commons.cli.subcommands.dataset) print_detail() (materials_commons.cli.print_formatter.PrintFormatter method) print_details() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method) (materials_commons.cli.subcommands.proj.ProjSubcommand method) print_file() (in module materials_commons.cli.subcommands.down) print_header() (materials_commons.cli.print_formatter.PrintFormatter method) print_known_remotes() (in module materials_commons.cli.subcommands.remote) print_projects() (in module materials_commons.cli.functions) print_published_dataset_details() (in module materials_commons.cli.subcommands.dataset) print_remote_help() (in module materials_commons.cli.functions)

print_remotes() (in module materials_commons.cli.functions) print_selection() (materials_commons.cli.sqltable.SqlTable method) print_selection_detail() (materials_commons.cli.sqltable.SqlTable method) print_table() (in module materials_commons.cli.functions) print_version() (in module materials_commons.cli.subcommands.versions) PrintFormatter (class in materials_commons.cli.print_formatter) proj (materials_commons.cli.cloned_project.ClonedProject attribute) project_exists() (in module materials_commons.cli.functions) project_id (materials_commons.cli.functions.ProjectConfig attribute) project_path (materials_commons.cli.functions.ProjectConfig attribute) project_path() (in module materials_commons.cli.functions) project_uuid (materials_commons.cli.functions.ProjectConfig attribute) ProjectConfig (class in materials_commons.cli.functions) ProjectTable (class in materials_commons.cli.functions) ProjSubcommand (class in materials_commons.cli.subcommands.proj) publish() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method)

R

random_name() (in module materials_commons.cli.functions) read_project_config() (in module materials_commons.cli.functions) remote (materials_commons.cli.functions.ProjectConfig attribute) remote_subcommand() (in module materials_commons.cli.subcommands.remote) remote_updatetime (materials_commons.cli.functions.ProjectConfig attribute) RemoteConfig (class in materials_commons.cli.user_config) remotes (materials_commons.cli.user_config.Config attribute)

RemoteTree (class in materials_commons.cli.treedb) remove() (in module materials_commons.cli.tree_functions) remove_hidden_project_files() (in module materials_commons.cli.functions) remove_if() (in module materials_commons.cli.functions) request_confirmation() (in module materials_commons.cli.functions) rm_subcommand() (in module materials_commons.cli.subcommands.rm) rmdir_if() (in module materials_commons.cli.functions)

S

save() (materials_commons.cli.functions.ProjectConfig method) (materials_commons.cli.user_config.Config method) select_all() (materials_commons.cli.functions.ProjectTable method) (materials_commons.cli.treedb.TreeTable method) select_by_id() (materials_commons.cli.treedb.TreeTable method) select_by_parent_id() (materials_commons.cli.treedb.TreeTable method) select_by_parent_path() (materials_commons.cli.treedb.TreeTable method) select_by_path() (materials_commons.cli.treedb.TreeTable method) set() (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method)

set_current_experiment() (in module materials_commons.cli.subcommands.expt) set_current_globus_download() (in module materials_commons.cli.subcommands.globus) set_current_globus_upload() (in module materials_commons.cli.subcommands.globus) size() (materials_commons.cli.sqltable.SqlTable method) sql_iter() (in module materials_commons.cli.sqltable) SqlTable (class in materials_commons.cli.sqltable) standard_download() (in module materials_commons.cli.subcommands.down) standard_upload() (in module materials_commons.cli.tree_functions)

T

tablecolumns() (materials_commons.cli.functions.ProjectTable static method) (materials_commons.cli.treedb.TreeTable static method) tablename() (materials_commons.cli.functions.ProjectTable static method) (materials_commons.cli.treedb.LocalTree static method) (materials_commons.cli.treedb.RemoteTree static method) tmpdir (materials_commons.cli.cloned_project.ClonedProject attribute)

to_dict() (materials_commons.cli.functions.ProjectConfig method) treecompare() (in module materials_commons.cli.tree_functions) treename() (materials_commons.cli.treedb.LocalTree static method) (materials_commons.cli.treedb.RemoteTree static method) TreeTable (class in materials_commons.cli.treedb) trunc() (in module materials_commons.cli.print_formatter)

U

unpublish() (materials_commons.cli.subcommands.dataset.DatasetSubcommand method) unset() (materials_commons.cli.subcommands.expt.ExptSubcommand method) (materials_commons.cli.subcommands.globus.GlobusDownloadTaskSubcommand method) (materials_commons.cli.subcommands.globus.GlobusUploadTaskSubcommand method)

up_subcommand() (in module materials_commons.cli.subcommands.up) update() (materials_commons.cli.treedb.TreeTable method) upload() (materials_commons.cli.cloned_project.ClonedProject method) upload_v0() (materials_commons.cli.globus.GlobusOperations method)

V

version_as_str() (in module materials_commons.cli.subcommands.versions)

versions_subcommand() (in module materials_commons.cli.subcommands.versions)

W

walk() (materials_commons.cli.treedb.TreeTable method)